Publications

I have divided my writings into

JOURNALS (Published, Submitted and arXiv):

  1. Omar, Y. A. D., Lipel, Z. G., and Mandadapu, K. K.,  The 2+\delta dimensional theory of electromechanics of lipid membranes: I. Electrostatics. arXiv:2301.09610.
  2. Fraggedakis, D., Hasyim, M. R., and Mandadapu, K. K., Inherent state melting and the onset of glassy dynamics in two-dimensional supercooled liquids. arXiv:2204.07528.
  3. Cheikh, M. I., Tchoufag, J., Osterfield, M., Dean, K., Bhaduri, S., Chuzong, Z., Mandadapu, K. K., Doubrovinski, K., A comprehensive model of Drosophila epithelium reveals the role of embryo geometry and cell topology in mechanical responses. bioRxiv.
  4. Hasyim, M. R., Batton, C. H., and Mandadapu, K. K., Supervised learning and the finite-temperature string method for computing comittor functions and reaction rates, accepted for publication in Journal of Chemical Physics, (2022). arXiv:2107.13522.
  5. Tchoufag, J. T., Sahu, A., and Mandadapu, K. K., Absolute/convective instabilities and front propagation in lipid membrane tubes, Physical Review Letters, 128, 068101 (2022). arXiv:2008.13780.
  6. Downs, J. G., Smith, N. D., Mandadapu, K. K., Garrahan, J. P., and Smith, M. I., Topographic control of quasi-2D granular phase transitions, Physical Review Letters, 127, 268002 (2021). arXiv:2108.07518. (Editor's Suggestion, Featured in Physics) 
  7. Hargus, C., Epstein, J. M., and Mandadapu, K. K., Odd diffusivity of chiral random motion, Physical Review Letters, 127, 178001 (2021). arXiv:2103.09958. (Editor's Suggestion) 
  8. Hasyim, M. R., and Mandadapu, K. K., A theory of localized excitations in supercooled liquids, Journal of Chemical Physics, 154, 244502 (2021). arXiv:2103.03015. (Editor's Pick, JCP Editors' Choice Collection 2021)
  9. Ahmed, M., Blum, M., Crumlin, E. J., Geissler, P. L., Head-Gordon, T., Limmer, D. T., Mandadapu, K. K., Saykally, R. J., Wilson, K. R., Molecular properties and chemical transformations near interfaces, Journal of Physical Chemistry B, (2021).  (Feature article)
  10. Cox, S. J., Mandadapu, K. K., and Geissler, P. L. Quadrupole-mediated dielectric response and the charge-asymmetric solvation of ions in water, Journal of Chemical Physics, 154, 244502 (2021). arXiv:2103.12389.
  11. Jamali, V., Hargus, C., Moshea, A., Aghazadehd, A., Haa, H., Mandadapu, K. K., and Paul Alivisatos, A., Anamolous nanoparticle surface diffusion in liquid cell TEM is revealed by deep learning-assisted analysis, Proceedings of National Academy of Sciences, 118, e2017616118 (2021). chemrxiv.12894050.
  12. Thomas, N. T., Mandadapu, K. K., and Agrwal, A., Electromechanics of lipid-modulated gating of potassium channels, accepted for publication in Mathematics and Mechanics of Solids, (2021)biorXiv.
  13. GrandPre, T., Klymko, K., Mandadapu, K. K., and Limmer, D. T., Entropy production fluctuations encode collective behavior in active matter, Physical Review E, 103, 012613 (2021). arXiv:2007.12149.
  14. Mandadapu, K. K., Abali, E. B., and Papadopoulos, P., On the polar nature and invariance properties of a thermomechanical theory for continuum-on-continuum homogenization, Mathematics and Mechanics of Solids, March (2021). arXiv:1808:02540.
  15. Sauer, R. A., Duong, T. X., and Mandadapu, K. K., A chemo-mechano-thermodynamical contact theory for adhesion, friction and (de)bonding reactions, accepted for publication in Mathematics and Mechanics of Solids, (2021).
  16. Fong, K. D., Bergstrom, H. K, McCloskey, B. D., and Mandadapu, K. K., Transport phenomena in electrolyte solutions: Non-equilibrium thermodynamics and statistical mechanics, AiChE Journal, 66, e17091 (2020). arXiv:2006.16164.
  17. Takatori, S. C., and Mandadapu, K. K., Motility-induced buckling and glassy dynamics regulate three-dimensional transitions of bacterial monolayers. arXiv:2003.05618.
  18. Omar, Y. A. D., Sahu, A., Sauer, R. A., and Mandadapu, K. K., Non-axisymmetric shapes of biological membranes from locally induced curvature, Biophysical Journal, 119, 1065-1077 (2020). biorXiv, 688127.
  19. Hargus, C., Klymko, K., Epstein, J. M., and Mandadapu, K. K., Time reversal symmetry breaking and odd viscosity in active fluids: Green-Kubo and NEMD results, Journal of Chemcial Physics, 152, 201102 (2020). arXiv:2002.10437. (Editor's Pick and Cover article)
  20. Epstein, J. M., and Mandadapu, K. K., Time reversal symmetry breaking in two-dimensional non-equilibrium viscous fluids, Physical Review E, 101, 052614 (2020). arXiv:1907.10041.
  21. Hasyim, M. R., and Mandadapu, K. K., Theory of crystallization versus vitrification. arXiv:2007.14968.
  22. Sahu, A., Glisman, A., Tchoufag, J. T., and Mandadapu, K. K., Geometry and dynamics of lipid membranes: The Scriven-Love number, Physical Review E, 101, 052401 (2020). arXiv:1910.10693.
  23. Sahu, A., Omar, Y. A. D., Sauer, R. A., and Mandadapu, K. K., Arbitrary Lagrangian-Eulerian finite element method for curved and deforming surfaces I. General theory and application to fluid interfaces, Journal of Computational Physics, 407, 109253 (2020). arXiv:1812.05086.
  24. Paul, K., Zimmerman, C., Mandadapu, K. K., Landis, C. M., Hughes, T. J. R., and Sauer, R. A., An adaptive space-time phase field formulation for dynamic fracture of brittle shells based on LR NURBS, Computational Mechanics, 65, 1039-1062 (2020). arXiv:1906.10679. 
  25. Tchoufag, J., Ghosh, P., Pogue, C. B., Nan, B., and Mandadapu, K. K., Mechanisms for bacterial gliding motility on soft substrates, Proccedings of National Academy of Sciences, 116, 25087-25096 (2019) arXiv: 1807:07529.
  26. Katira, S., Garrahan, J. P., and Mandadapu, K. K., Theory for glassy behavior of supercooled liquid mixtures, Physical Review Letters,  123, 100602 (2019) arXiv:1903.08557.
  27. Zimmerman, C., Toshniwal, D., Landis, C. M., Hughes, T. J. R., Mandadapu, K. K., and Sauer, R. A., An isogeometric finite element formulation for phase transitions on deforming surfaces, Computer Methods in Applied Mechanics and Engineering, 351, 441-477 (2019) arXiv:1710.02547
  28. Epstein, J. M., Klymko, K., and Mandadapu, K. K., Statistical mechanics of transport processes in active fluids II: Equations of hydrodynamics for active Brownian partice, Journal of Chemical Physics, 150, 164111 (2019) arXiv: 1809:01114.
  29. Doubrovinski, K., Tchoufag, J., and Mandadapu, K. K., A simplified mechanism for anisotropic constriction in Drosophila mesoderm,   Development, 145, 167387 (2018).
  30. Hudson, A., and Mandadapu, K. K., On the nature of the glass transition in atomistic models of glass formers. arXiv: 1804:03769.
  31. Dasbiswas, K., Mandadapu, K. K., and Vaikuntanathan, S., Topological localization in out-of-equilibrium dissipative systems,  Proceedings of National Academy of Sciences, 115, E9031-E9040 (2018) arXiv:1706.04526
  32. Katira, S., Garrahan, J. P., and Mandadapu, K. K., Solvation in space-time: Pre-transition effects in trajectory space, Physical Review Letters, 120, 260602, (2018). arXiv:1710.04747
  33. Klymko, K. Mandal, D., and Mandadapu, K. K., Statistical mechanics of transport processes in active fluids: Equations of hydrodynamics, Journal of Chemical Physics, 147, 194109 (2017) arXiv:1706.02694.
  34. Mandal, D., Klymko, K., and Mandadapu, K. K., Generalized hydrodynamics of active polar suspensions, (2017) arXiv:1706.02284.
  35. Sahu, A., Sauer, R. A., and Mandadapu, K. K., The irreversible thermodynamics of curved lipid membranes, Physical Review E, 96, 042409 (2017) arXiv:1701.06495.
  36. Mandadapu, K. K., and Hurley, J., Friction at the BAR leads to membrane breakup, Cell, 170, 14-16 (2017). 
  37. Sauer, R. A., Duong, T. X., Mandadapu, K. K., and Steigmann, D. J., A stabilized finite element formulation for liquid shells and its application to lipid bilayers, Journal of Computational Physics, 330, 436-466 (2017) arXiv:1601.03907. 
  38. Mercer, B., Mandadapu, K. K., and Papadopoulos, P., Homogenization of high-frequency plane wave propagation in linear elastic layered media using a novel continuum homogenization theory, International Journal of Solids and Structures96, 162-172 (2016). 
  39. Kshirsagar, S., Mandadapu, K. K., and Papadopoulos, P., Classical molecular dynamics simulations of crystal lattices with truncated Taylor series-based interatomic potentials, Computational Materials Science, 120, 127-134 (2016).
  40. Katira, S., Mandadapu, K. K., Vaikuntanathan, S., Smit, B., Chandler, D., Pre-transition effects mediate forces of assembly between transmembrane proteins,  eLife, 5:e13150 (2016) arXiv:1506.04298.
  41. Katira, S., Mandadapu, K. K., Vaikuntanathan, S., Smit, B., Chandler, D., The order-disorder transition in lipid bilayers is a first-order heaxtic to liquid phase transition, (2016) arXiv:1506.04310.
  42. Mandadapu, K. K., Nirody, J., Berry, R., and Oster, G., The mechanics of torque generation in the bacterial flagellar motor,  Proceedings of National Academy of Sciences, 112, E4381-E4389 (2015) arXiv:1501:02883.
  43. Mercer, B., Mandadapu, K. K., and Papadopoulos, P., Novel formulations of microscopic boundary-value problems in continuous multiscale finite element methods, Computer Methods in Applied Mechanics and Engineering, 286, 268-292 (2015). 
  44. Rangamani P., Mandadapu, K. K., and Oster, G., Protein induced spontaneous curvature changes membrane tension, Biophysical Journal107, 751–762  (2014). 
  45. Mandadapu, K. K., Jones, R. E., and Zimmerman, J. A., On the microscopic definitions of dislocation density tensor, Mathematics and Mechanics of Solids, 19, 744-757 (2014) .
  46. Mandadapu, K. K., Templeton, J. A., and Lee, J. W., Polarization as a field variable from molecular dynamics simulations, Journal of Chemical Physics, 139, 054115-1-10 (2013).
  47. Lee, J. W., Templeton, J. A., Mandadapu, K. K., and Zimmerman J. A., Investigation of various molecular dynamics models of electrical double layers in nanochannels, Journal of Chemical Theory and Computation, 9, 3051-3061 (2013).
  48. Rangamani, P., Agrawal, A., Mandadapu, K. K., Oster, G., and Steigmann, D. J., Interaction between surface shape and intra-surface viscous flow on lipid membranes, Biomechanics and Modeling in Mechanobiology, 12, 833-845 (2013).
  49. Ulz, M., Mandadapu, K. K., Papadopoulos, P., On the estimation of spatial averaging volume for determining stress using atomistic methods, Modeling and Simulation in Materials Science and Engineering, 21, 015010 (2013).
  50. Jones, R. E., and Mandadapu, K. K., Adaptive Green-Kubo estimates of transport coefficients from molecular dynamics based on robust error analysis, Journal of Chemical Physics, 136, 154102 (2012).
  51. Mandadapu, K. K., Sengupta, A., and Papadopoulos, P., A homogenization method for thermomechanical continua using extensive physical quantities, Proceedings of Royal Society A : Mathematical, Physical and Engineering Sciences, 468, 1696-1715 (2012).
  52. Mandadapu, K. K., Jones, R. E., and Papadopoulos, P., A homogeneous non-equilibrium molecular dynamics method for calculating the heat transport coefficient of mixtures and alloys, Journal of Chemical Physics, 133, 034122 (2010). (Editor's Choice)
  53. Mandadapu, K. K., Jones, R. E., and Papadopoulos, P., Generalization of the homogeneous non-equilibrium molecular dynamics method for calculating thermal conductivity to multi-body potentials, Physical Review E, 80, 047702 (2009).
  54. Mandadapu, K. K., Jones, R. E., and Papadopoulos, P., A homogeneous non-equilibrium molecular dynamics method for calculating thermal conductivity with a three-body potential, Journal of Chemical Physics, 130, 204106 (2009).
  55. Mandadapu, K. K., Govindjee, S., and Mofrad, M. R. K., On the cytoskeleton and soft glassy rheology, Journal of Biomechanics, 41, 1467-1478 (2008).
  56. Guthikonda, V. S. R., Mandadapu K. K., Sivakumar, S. M., and Srinivasa, A. R., On smeared and micromechanical approaches to modeling martensitic transformations in Shape Memory Alloys, Nonlinear Analysis: Real World Applications, 9, 990-1011 (2008). 
 © Kranthi K. Mandadapu